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First complete corn genome map created

In a groundbreaking achievement, scientists, led by University of Nebraska–Lincoln researcher James Schnable, have successfully mapped the complete genome of corn. This milestone development promises to revolutionize the future of agriculture, offering invaluable insights into crop health, resilience, and productivity. Published recently in the prestigious journal Nature Genetics, the study represents a significant leap forward in the field of genetics, coming on the heels of the human genome’s complete mapping just a year ago. The corn genome, due to its sheer size and complexity, has long posed a formidable challenge for scientists seeking to decode its genetic makeup.

Over the years, technology has made strides in this area, with the first draft of the corn genome emerging in 2009. However, numerous gaps remained, comprising over 100,000 unresolved genetic sequences. James Schnable, the Charles O. Gardner Professor of Agronomy, explained, “Our team drew on the latest technology, plus the particular expertise of the individual team members, and that finally made possible the mapping of the complete corn genome.” A significant aspect of this achievement was the resolution of complex genetic regions containing nearly identical paralogs – genes that are so similar they were previously indistinguishable. Corn’s genetic repetition presents an extraordinary challenge, with vast stretches of genetic material intermingled, making it difficult to pinpoint individual gene functions.

The fully sequenced corn genome holds immense potential for developing improved corn varieties by enhancing the understanding of how genetic differences influence traits. Schnable explained, “Rather than conducting selection, we will have the potential to design and engineer corn varieties to adapt to changing climates and grow in more nitrogen-limited conditions.” Now that the corn genome is fully sequenced, scientists can embark on essential follow-up research to study and understand the function of individual genes previously unidentified. Schnable emphasized the university’s advantage in this endeavor, given its robust research and Extension network and the ability to grow corn varieties across a wide range of environments.

Environmental and dam risks of Johne’s Disease

Johne’s Disease or paratuberculosis is a chronic disease of ruminants which is responsible for large economic losses in the dairy sector. The disease is caused by Mycobacterium avium subspecies paratuberculosis (MAP), which typically infects calves that remain latently infected during a long period, making early detection of infection especially challenging. Cow-to-calf transmission can occur in-utero via milk/colostrum or faecal-orally, so understanding the different transmission routes to calves is important in informing control recommendations. The aim of a longitudinal study carried out by researchers at the Royal Veterinary College was to measure the association between the transmission routes via the dam and the environment on a calf that subsequently tested serologically positive for MAP. The study comprised of 439 UK dairy calves from 6 herds enrolled between 2012 and 2013. These calves were followed from birth until 2023. Individual calf data was captured at birth. During follow-up, individuals entering the milking herd were quarterly tested for the presence of MAP antibodies using milk ELISA. Cox regression models were used to measure the association between exposure from the dam (in-utero and/or colostrum) or from the environment (long time in dirty yard) and time to first detection of MAP infection. In conclusion, the researchers found that: 1) Map infection risk is partly driven by the dam’s infection status. 2) Calves from infected dams have higher MAP infection risk, regardless of the dam’s test status at calving. 3) Spending prolonged time in a dirty yard increases the risk of MAP infection. 4) The dam’s impact on MAP risk extends beyond colostrum transmission. 5) MAP persistence in commercial dairy herds results from a combination of dam-related and environment-related factors.

Remarkable progress in sourcing soy responsibly in Europe

Results published in the European Soy Monitor 2021, points to 40% of soybean meal equivalent of total European soy consumption to be sourced according to the FEFAC Soy Sourcing guidelines and 24% certified deforestation-free soy. The report also refers to FEFAC’s initial risk assessment which estimates that just under 94% of EU soy imports were sourced from low-deforestation regions, based on EU trade statistics and industry expert assessments. The figures show good progress continues to be made. Since the publication of the first European Soy Monitor of 2018 estimations, the provisional data for 2021 indicates that FEFAC members reported an increase of 21% over the past 3 years. However, the 40% figure was slightly lower than the 43.8% recorded in 2020. Pedro Cordero, FEFAC president, welcomed the latest figures: “I am pleased with the continued positive trend that the European feed sector and its supply chain partners have been able to display as regards the industry’s use of responsible soy. FEFAC’s internal estimates indicate that a significant part of soy used in the EU in 2021 came from regions with low deforestation risk, including the EU, United States, Canada and Ukraine. These sources are considered “deforestation-free”, although not officially certified as such. The soybean trade itself has remained relatively unaffected. Brazil and the United States continue to be the world’s biggest producers and China by far the biggest soy consuming country. European soy production increased from 2.68m tonnes in 2020 to 2.71m in 2021.

Positive outlook for the global poultry market as challenges ease

Global poultry market growth in 2023 is expected to be slow, reaching only 1%, according to a recent report from Rabobank. Global poultry markets are well positioned to gradually improve in Q4 2023 and early 2024, although the level will depend on how well-balanced they are. After a period of slow poultry consumption growth due to a weak global economy and rising prices resulting from cost increases, global demand has room for some recovery, driven mainly by lower feed costs and, therefore, lower chicken prices. Markets will stay highly price-driven, but poultry should be able to benefit from its relatively competitive pricing in many markets compared to other proteins like beef, pork, and alternative proteins. Rabobank sees improving market conditions in the US, Mexico, Japan, South Africa, Indonesia, and China. However, the situation in Indonesia and China will be fragile.

The EU market has been strong, but high levels of fresh chicken imports are creating pressure. Brazil and Thailand face more challenging conditions and will need more supply growth discipline in oversupplied domestic markets. Global trade is expected to stay strong in 2H 2023 after reaching a record-high 7.2 million tonnes in the first half of the year, driven entirely by increased trade of raw poultry meat, while trade in processed poultry meat dropped sharply. Amid more price-driven markets, consumers’ product preferences are changing, and this trend is expected to continue in 2H 2023 and into 2024. Government interventions driven by food security, geopolitics, and sustainability will continue to impact markets and create volatility in global trade. Avian influenza will remain an important factor that could suddenly impact global markets, from both a local supply perspective and a trade perspective, especially if Brazil’s southern states are hit. Producers should maintain focus on the operational side.

Although we believe feed prices will drop slightly, operational costs are still at historic highs, and risks of further volatility exist in grain prices (due to El Niño) and in energy prices and availability. Ongoing leadership in terms of costs and procurement will remain key. Additionally, producers should fine-tune supply to changes in poultry demand related to products, distribution, and market development.

When might amino acid supplement be needed to boost milk yield?

When dairy cows are fed diets with reduced protein concentrations – aimed at decreased environmental nitrogen pollution from their manure such as nitrate leaching, nutrient-laden run-off and ammonia volatilization – their milk production can suffer. Supplementing the amino acid histidine may help in maintaining, and even increasing, milk and milk-protein yields. That’s the conclusion of a new study conducted by an international research team led by Alexander Hristov, a senior researcher at Penn State University. The researchers recently published their findings in the Journal of Dairy Science. Histidine is an essential amino acid for protein synthesis, Hristov explained. He added that earlier studies in Europe have shown that low histidine levels can limit milk production in dairy cows fed diets based on grass silage, which is the predominant forage in Northern Europe. Limited histidine was not considered a challenge for dairy cows fed typical North American diets until research conducted in Hristov’s lab in the College of Agricultural Sciences at Penn State a few years ago revealed the problem. In those experiments, blood histidine concentrations dropped significantly when cows were fed reduced-protein diets aimed at curbing nitrogen losses and ammonia emissions from manure.

The recently published series of experiments also confirmed the importance of histidine to maintain milk production and milk protein content when cows were fed diets with reduced protein concentration. “The culmination of this research was the recently published meta-analysis of 17 studies which concluded that histidine supplementation of dairy cow diets increased feed dry matter intake, milk yield and milk protein concentration,” Hristov said. “Notably, and as Penn State research has shown, the increase in milk protein concentration with histidine supplementation was up to four times greater for cows fed diets that had lowered protein content than diets formulated to provide adequate protein intake, according to diet-formulation models.” Histidine is unique among the essential amino acids because there are body reserves that can serve as sources of histidine and mask short-term deficiencies, Hristov said.

For that reason, histidine effects in dairy cows should be studied in long-term, continuous-design experiments. “Further, microbial protein synthesized in the rumen – which is the main source of amino acids for the cow – is low in histidine, relative to other potentially milk-limiting amino acids,” Hristov said. “That supports our hypothesis that histidine becomes the first limiting amino acid when cows are fed low-protein diets. So, the role of microbial protein as a source of amino acids for milk protein synthesis and body functions becomes even more critical.”

World pork market shows steady production growth, weak consumption

Steady gains in production in combination with weaker consumption continue to pressure global pork markets and trade. That is a brief summary of the latest quarterly pork report by Rabobank. All in all, the bank stated, lower feed costs, better animal health and improved productivity bolster industry optimism despite challenging returns and uncertain consumption trends. After productivity challenges in 2022 and 2023, several key growing regions appear to be turning a corner, the bank wrote. While disease pressure is still an issue in some regions, overall herd health has improved. In a news release, the bank’s senior animal protein analyst Christine McCracken said: “A renewed focus on cost reduction – given inflationary pressures resulting in the elimination of less productive operations – is also contributing to a rebound in production per sow. Although this improvement is a welcome trend and lowers costs, the additional production is compounding regional oversupplies and weighing on the market.” At the same time, breeding herd reductions in most geographies outside Europe and South Korea are slow, despite ongoing margin pressure and limited optimism for a quick turnaround in global trade, the bank said. Corn and soybean prices moved lower in the third quarter of 2023, after a good North American harvest helped rebuild stocks and expectations for a large South American crop emerged, the bank wrote. Consumers are adjusting to inflationary pressures, yet pork remains a dietary staple and overall consumption trends remain stable. However, pack types and sales channels continue to shift. McCracken concluded, “In the final quarter of 2023, we expect global trade to remain slow given large inventories, relatively high domestic production, and low pork prices in key importing regions. Rising EU pork prices may also limit export volumes.” In Europe, pork production in the 27 EU countries and the UK contracted sharply, Rabobank reported. In the first 7 months of 2023, this would come down to 8.6% year-on-year. In Germany, the sow herd had contracted by 2% in June 2023 when compared to December 2022. One year earlier, the contraction had been 12% in the same period. Contraction in the sow herd will slow down, the bank expects, due to improved producer margins. Exports remain weak on relatively high prices and weaker global economies.

Russia refuses to lower export prices: producers complain

The Russian authorities unofficially prohibit farmers from selling grain to foreign customers at a price below the minimal threshold, though this strategy visibly hurts the industry. Russia blocked the delivery of 480,000 tons of wheat to Egypt in September since the sale price was below the minimal threshold of $270 per ton FOB (“Free on Board”) allowed by the government, Russian newspapers Kommersant and Forbes reported, citing their own sources. Russian publications assumed that by sticking to the minimal export price, Russia targets to use its dominant position in the global market to the advantage of the Russian farmers, who see their financial health worsening, and secure additional income to the federal budget. Russian publication Gorodn disclosed that the Russian strategy has already put pressure on the supply chain. In the southern regions, largely trade companies have already suspended purchasing grain from farmers, citing a lack of available warehouse capacity to store it. Andrey Sizov, director of SovEcon, a Moscow-based consultancy, admitted that the government policy slows down Russian grain exports, and the country could end up with record carryover stocks similar to what happened a year before. One source who wished to remain anonymous told Gorodn that wheat, similar to Russian wheat, is now sold on the global market for a maximum of $240 per ton FOB. “Agricultural Ministry believes that foreign buyers cannot live without Russian grain; they will buy at our price; we just need to wait. But there is a question for how long,” the source said, explaining that Algeria recently purchased the amount needed until the end of the year, Egypt will hold a couple more tenders and will stop purchasing until January. “So, wait until January? But in November, harvesting starts in Argentina, then in Australia, and everyone sells [grain] on the same market. So, it is not guaranteed that prices will rise to the desired level in January, especially given that the market is oversaturated with grain, including Ukrainian, the supply of which has again resumed through Odesa,” the source told Gorodn. A minimal export price is set also for the sunflower oil. As a result, some Russian oil factories suspended the start of work towards the end of September, while usually they open their doors around September 10. On the domestic market, farmers are trying to sell sunflower seed at the level only covering the production costs. Some farmers complain that the new measure puts heavy pressure on the industry, already troubled by export duties. As a result of the duties, the average profitability in the industry plummeted from 17% to 3%, estimated Alexander Yaroshenko, director of grain company Ural-Don. The minimal export price has proved to be another blow for farmers. “I believe that 4 more years of such restrictions and there will be no more grain export from Russia,” said Yaroshenko. “Perhaps we will not roll back to the state when we buy grain in Canada, like in Soviet times, but we will definitely lose an opportunity to export it,” he said.

Full article! – Positive outlook for the global poultry market as challenges ease

Global poultry market growth in 2023 is expected to be slow, reaching only 1%, according to a recent report from Rabobank. Global poultry markets are well positioned to gradually improve in Q4 2023 and early 2024, although the level will depend on how well-balanced they are.

After a period of slow poultry consumption growth due to a weak global economy and rising prices resulting from cost increases, global demand has room for some recovery, driven mainly by lower feed costs and, therefore, lower chicken prices. Markets will stay highly price-driven, but poultry should be able to benefit from its relatively competitive pricing in many markets compared to other proteins like beef, pork, and alternative proteins.

Rabobank sees improving market conditions in the US, Mexico, Japan, South Africa, Indonesia, and China. However, the situation in Indonesia and China will be fragile. The EU market has been strong, but high levels of fresh chicken imports are creating pressure. Brazil and Thailand face more challenging conditions and will need more supply growth discipline in oversupplied domestic markets.

Global trade is expected to stay strong in 2H 2023 after reaching a record-high 7.2 million tonnes in the first half of the year, driven entirely by increased trade of raw poultry meat, while trade in processed poultry meat dropped sharply. Amid more price-driven markets, consumers’ product preferences are changing, and this trend is expected to continue in 2H 2023 and into 2024.

Brazil is expected to benefit the most as a cost-price leader in raw chicken meat, while Thailand and China need to refocus on raw chicken trade, which will challenge these exporters’ value position.

Government interventions driven by food security, geopolitics, and sustainability will continue to impact markets and create volatility in global trade. Avian influenza will remain an important factor that could suddenly impact global markets, from both a local supply perspective and a trade perspective, especially if Brazil’s southern states are hit.

Producers should maintain focus on the operational side. Although we believe feed prices will drop slightly, operational costs are still at historic highs, and risks of further volatility exist in grain prices (due to El Niño) and in energy prices and availability. Ongoing leadership in terms of costs and procurement will remain key. Additionally, producers should fine-tune supply to changes in poultry demand related to products, distribution, and market development.

Full article! – Fighting calf coccidiosis (not only) with coccidiostats

Coccidiosis is an intestinal disease caused by unicellular parasites that usually occurs in young dairy or beef calves between 3 weeks and 6 months of age. Although it is rarely fatal, it can cause extensive gut damage and ill-thrift and is commonly seen under intensive management conditions with high stocking rates.

Autumn-born calves are at greater risk, with Cocci requiring warmth and moisture. A wet September and October increases infection risk as the environment becomes more favourable for the occysts to spread from calf to calf.

Veterinary specialists Murray Direct said calves become infected by consuming coccidiosis eggs from pasture, feed, waste and bedding, or by licking contaminated calves. The parasite can exist for months in their surroundings and failure to control the disease can influence future productivity levels, including growth rates, as well as delaying the onset of puberty, leading to milk loss production in dairy calves.

Third-generation dairy farmer, Darren Coombes, who farms with his son Tim on 890 acres near Bridgwater, Somerset in the UK, believes feeding a coccidiostat to his dairy calves can help control the disease. He recently had an outbreak affecting a fifth of his calves. 

Coombes milks 425 cows – year-round calving Holsteins – supplying Muller and Sainsbury’s. Animals are milked twice daily, producing 10,500 litres at 4.3% fat and 3.25% protein.

“We didn’t lose any calves, but we lost a lot of growth and it took the calves a long time to recover,” he said.

His vet recommended the calves be fed the coccidiostat Deccox and, alongside improved cleanliness, it has helped get on top of the outbreaks.

Coombes said newborn calves receive colostrum for the first 3 days. Calves are kept in pens for the first week and at day 4 they transition onto a milk replacer with 3 litres fed in a bottle twice a day. From birth, calves are given clean water and free access to fresh straw and Mole Valley Farmers’ NSP NPP Calf Rearer 18+ Deccox, which is an 18% protein rearer nut with an added coccidiostat to help treat and manage coccidiosis.

“It is a very consistent, palatable product and calves love it. After 7 days, calves move onto one of the 2 Forster-Technik automatic milk feeders where they are kept in groups of 30. Calves get fed 4 feeds a day and can have a maximum of 8 litres in 24 hours. At day 49, the milk is gradually reduced and calves are weaned at day 56.”

Calves stay in the same group until they are 6 months old. After 5 months they are introduced to 1kg of homegrown rolled barley and ad-lib grass silage with the rearer nut cut back to 1kg. Deccox is removed at 9-10 months. Coombes notes: “It has completed kept coccidiosis at bay. We tried different things and we could never really get to the bottom of it until we introduced the Deccox.”

But hygiene is key, too. Calf sheds are disinfected and steam-cleaned between batches and straw bedding is also replenished liberally to keep calves dry.

Andy Adler of Molecare Farm Vets said preventing faecal contamination of water and feed troughs is crucial in controlling coccidiosis. “Raising feed and water troughs alongside regular cleaning is very important to prevent faecal-to-oral transmission. Straw bedding should be replenished often so calves are only eating fresh, clean straw.”

Amino acids synthesised without living organisms

Researchers at the Technical University of Munich have synthesised the amino acid L-alanine using enzymes, according to a report in the journal Chem Catalysis. Although the technology needs more work before it is ready for commercialisation, it could one day allow feed manufacturers to produce amino acids directly from carbon dioxide and renewable hydrogen and ammonia. Producers typically rely on fossil fuels or microorganisms to make amino acids, says Volker Sieber, a professor at the Technical University of Munich and one of the authors of the Chem Catalysis report. While single-cell protein synthesis is generally considered more sustainable than conventional amino acids derived from fossil fuels, it still requires glucose to feed the microbes. And the production of this glucose biomass still requires acres of land that could otherwise support greater biodiversity, Sieber said. If you really want to be sustainable in what you do … it’s more important to use renewable energy and carbon dioxide,” Sieber said, arguing that a windmill takes up less land than acres of crops. But if you try to synthesise single-cell proteins using carbon dioxide as a raw material, the process triggers intermediate chemicals that are toxic to the microorganisms themselves, Sieber said. To get around this barrier, the Technical University of Munich laboratory removed key enzymes responsible for amino acid synthesis from the microbes to replicate the cellular process outside a living organism. Using carbon dioxide, hydrogen and ammonia – all preferably from renewable resources, Sieber said – the lab was able to achieve a conversion efficiency of nearly 100%. They started with L-alanine because of its relative simplicity, he said, but have since synthesised other amino acids as well. Other processes – including microbial synthesis and the extraction of L-alanine from fossil fuels – are still cheaper than the enzymatic process developed in the lab, Sieber said. But the team at the Technical University of Munich is now working to refine the process and reduce costs. Sieber believes that if they can speed up the action of the enzymes, they will be able to achieve cost parity with other sources of amino acids.